diff options
| author | sanine <sanine.not@pm.me> | 2023-11-12 05:17:19 -0600 |
|---|---|---|
| committer | sanine <sanine.not@pm.me> | 2023-11-12 05:17:19 -0600 |
| commit | 444b2b5abfbb70473b0785b38eaba1df4197ae69 (patch) | |
| tree | 98eeb63082c679f8944c740f466c1e56aef24aad /src/genome/genome.test.js | |
| parent | e3a042a7a5c041dad63255965576346377e4f823 (diff) | |
refactor genome to include size information
Diffstat (limited to 'src/genome/genome.test.js')
| -rw-r--r-- | src/genome/genome.test.js | 185 |
1 files changed, 101 insertions, 84 deletions
diff --git a/src/genome/genome.test.js b/src/genome/genome.test.js index 37bdacc..bc64e4e 100644 --- a/src/genome/genome.test.js +++ b/src/genome/genome.test.js @@ -1,7 +1,14 @@ 'use strict';
+// genome structure
+// {
+// genes: gene[]
+// n_input, n_internal, n_output
+// }
+
+
import {
- get_size,
+ validate_genome,
parse_genome,
mut_gene_source,
mut_gene_sink,
@@ -13,20 +20,39 @@ import { } from './genome';
-test('genome validation and size', () => {
- expect(get_size(0, 0, [ [ 0, 0, 1.0 ] ])).toBe(1);
- expect(get_size(2, 1, [ [ 0, 2, 1 ] ])).toBe(3);
- expect(get_size(2, 1, [ [ 0, 1, 1 ] ])).toBe(-1);
- expect(get_size(2, 1, [ [ 0, 2, 5 ] ])).toBe(-1);
+test('genome validation', () => {
+ expect(validate_genome({
+ n_input: 0, n_internal: 1, n_output: 0,
+ genes: [[0, 0, 1.0]],
+ })).toBe(true);
+ expect(validate_genome({
+ n_input: 2, n_internal: 0, n_output: 1,
+ genes: [[0, 2, 1]],
+ })).toBe(true);
+ expect(validate_genome({
+ n_input: 2, n_internal: 0, n_output: 1,
+ genes: [[2, 0, 1]],
+ })).toBe(false);
+ expect(validate_genome({
+ n_input: 2, n_internal: 0, n_output: 1,
+ genes: [[2, 2, 1]],
+ })).toBe(false);
+ expect(validate_genome({
+ n_input: 2, n_internal: 1, n_output: 1,
+ genes: [[3, 2, 1]],
+ })).toBe(false);
});
test('parse a genome into a neural net', () => {
- const n = parse_genome(1, 1, [
- [0, 1, 1],
- [1, 1, 1],
- [1, 2, 1]
- ]);
+ const n = parse_genome({
+ n_input: 1, n_internal: 1, n_output: 1,
+ genes: [
+ [0, 1, 1],
+ [1, 1, 1],
+ [1, 2, 1]
+ ]
+ });
expect(n.input_count).toBe(1);
expect(n.output_count).toBe(1);
@@ -121,48 +147,45 @@ test('expand genome', () => { const n_internal = 3;
const n_output = 1;
- const genome = [
- [0, 1, 0],
- [1, 2, 0],
- [2, 3, 0],
- [3, 4, 0],
- ];
-
- expect(mut_genome_expand([
- n_input, n_internal, n_output, genome
- ], 0.0)).toEqual([
- n_input, n_internal+1, n_output,
- [
+ const genome = {
+ n_input, n_internal, n_output,
+ genes: [
+ [0, 1, 0],
+ [1, 2, 0],
+ [2, 3, 0],
+ [3, 4, 0],
+ ],
+ };
+
+ expect(mut_genome_expand(genome, 0.0)).toEqual({
+ n_input, n_internal: n_internal+1, n_output,
+ genes: [
[0, 2, 0],
[2, 3, 0],
[3, 4, 0],
[4, 5, 0],
],
- ]);
+ });
- expect(mut_genome_expand([
- n_input, n_internal, n_output, genome
- ], 0.5)).toEqual([
- n_input, n_internal+1, n_output,
- [
+ expect(mut_genome_expand(genome, 0.5)).toEqual({
+ n_input, n_internal: n_internal+1, n_output,
+ genes: [
[0, 1, 0],
[1, 3, 0],
[3, 4, 0],
[4, 5, 0],
],
- ]);
+ });
- expect(mut_genome_expand([
- n_input, n_internal, n_output, genome
- ], 0.99)).toEqual([
- n_input, n_internal+1, n_output,
- [
+ expect(mut_genome_expand(genome, 0.99)).toEqual({
+ n_input, n_internal: n_internal+1, n_output,
+ genes: [
[0, 1, 0],
[1, 2, 0],
[2, 4, 0],
[4, 5, 0],
],
- ]);
+ });
});
@@ -171,48 +194,45 @@ test('contract genome', () => { const n_internal = 3;
const n_output = 1;
- const genome = [
- [0, 1, 0],
- [1, 2, 1],
- [2, 3, 2],
- [3, 4, 3],
- ];
-
- expect(mut_genome_contract([
- n_input, n_internal, n_output, genome
- ], 0.0)).toEqual([
- n_input, n_internal-1, n_output,
- [
+ const genome = {
+ n_input, n_internal, n_output,
+ genes: [
+ [0, 1, 0],
+ [1, 2, 1],
+ [2, 3, 2],
+ [3, 4, 3],
+ ],
+ };
+
+ expect(mut_genome_contract(genome, 0.0)).toEqual({
+ n_input, n_internal: n_internal-1, n_output,
+ genes: [
[0, 1, 0],
[0, 1, 1],
[1, 2, 2],
[2, 3, 3],
],
- ]);
+ });
- expect(mut_genome_contract([
- n_input, n_internal, n_output, genome
- ], 0.5)).toEqual([
- n_input, n_internal-1, n_output,
- [
+ expect(mut_genome_contract(genome, 0.5)).toEqual({
+ n_input, n_internal: n_internal-1, n_output,
+ genes: [
[0, 1, 0],
[1, 2, 1],
[1, 2, 2],
[2, 3, 3],
],
- ]);
+ });
- expect(mut_genome_contract([
- n_input, n_internal, n_output, genome
- ], 0.99)).toEqual([
- n_input, n_internal-1, n_output,
- [
+ expect(mut_genome_contract(genome, 0.99)).toEqual({
+ n_input, n_internal: n_internal-1, n_output,
+ genes: [
[0, 1, 0],
[1, 2, 1],
[2, 3, 2],
[2, 3, 3],
],
- ]);
+ });
});
@@ -223,21 +243,21 @@ test('insert new genes', () => { const n_output = 1;
const weight_max = 4;
- expect(mut_genome_insert([
+ expect(mut_genome_insert({
n_input, n_internal, n_output,
- []
- ], weight_max, 0, 0.5, 0)).toEqual([
+ genes: []
+ }, weight_max, 0, 0.5, 0)).toEqual({
n_input, n_internal, n_output,
- [[0, 2, -4]]
- ]);
+ genes: [[0, 2, -4]]
+ });
- expect(mut_genome_insert([
+ expect(mut_genome_insert({
n_input, n_internal, n_output,
- [[0, 2, -4]]
- ], weight_max, 0.99, 0, 1)).toEqual([
+ genes: [[0, 2, -4]]
+ }, weight_max, 0.99, 0, 1)).toEqual({
n_input, n_internal, n_output,
- [[0, 2, -4], [2, 1, 4]]
- ]);
+ genes: [[0, 2, -4], [2, 1, 4]]
+ });
});
@@ -245,21 +265,18 @@ test('remove genes', () => { const n_input = 0;
const n_output = 0;
const n_internal = 3;
- const genome = [
- [0, 1, 0], [1, 2, 0],
- ];
+ const genome = {
+ n_input, n_internal, n_output,
+ genes: [[0, 1, 0], [1, 2, 0]],
+ };
- expect(mut_genome_delete([
- n_input, n_internal, n_output, genome
- ], 0.0)).toEqual([
+ expect(mut_genome_delete(genome, 0.0)).toEqual({
n_input, n_internal, n_output,
- [[1, 2, 0]],
- ]);
+ genes: [[1, 2, 0]],
+ });
- expect(mut_genome_delete([
- n_input, n_internal, n_output, genome
- ], 0.99)).toEqual([
+ expect(mut_genome_delete(genome, 0.99)).toEqual({
n_input, n_internal, n_output,
- [[0, 1, 0]],
- ]);
+ genes: [[0, 1, 0]],
+ });
});
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